MRICloudCoregMPR

Purpose. Coregister perfusion outputs to MPR (MRICloud structural) space and rename results with _mpr suffixes.

Workflow

Build a skull-stripped MPR target via helper (uses mpr_folder, mpr_name).
Choose source: - if M0Type != "Estimate" → rM0ave.nii - else → mean{asl}.nii
Coregister other files in perf space to MPR: - {asl}_aCBF_native.nii, {asl}_rCBF_native.nii, brnmsk_clcu.nii - plus {asl}_ATT_native.nii if multi-delay and present
Rename outputs: - r{asl}_aCBF_native.nii → {asl}_aCBF_mpr.nii (and similarly for rCBF, ATT, mask)

Inputs

MRICloudReadMPR must be run beforehand to populate mpr_folder/mpr_name.
Perfusion outputs from MRICloud CBF/M0 steps.

Outputs

{asl}_aCBF_mpr.nii, {asl}_rCBF_mpr.nii, optional {asl}_ATT_mpr.nii
brnmsk_clcu_mpr.nii

Configuration

None.

YAML example

modules:
- name: MRICloudCoregMPR